Seurat (version 1.4.0)

AverageExpression: Averaged gene expression by identity class

Description

Returns gene expression for an 'average' single cell in each identity class

Usage

AverageExpression(object, genes.use = NULL, return.seurat = F,
  add.ident = NULL, ...)

Arguments

object

Seurat object

genes.use

Genes to analyze. Default is all genes.

return.seurat

Whether to return the data as a Seurat object. Default is false.

add.ident

Add identity label to class

...

Arguments to be passed to methods such as Setup

Value

Returns a matrix with genes as rows, identity classes as columns.

Details

Output is in log-space, but averaging is done in non-log space.