Seurat (version 2.2.0)

InitialMapping: Infer spatial origins for single cells

Description

Probabilistically maps single cells based on (imputed) gene expression estimates, a set of mixture models, and an in situ spatial reference map.

Usage

InitialMapping(object, cells.use = NULL)

Arguments

object

Seurat object

cells.use

Which cells to map

Value

Seurat object, where mapping probabilities for each bin are stored in [e-mail]

Examples

# NOT RUN {
# Note that the PBMC test example object does not contain spatially restricted
# examples below are only demonstrate code
pmbc_small <- InitialMapping(pbmc_small)
# }
# NOT RUN {
# }