Identifies differentially expressed genes between two groups of cells using a poisson generalized linear model
PoissonDETest(object, cells.1, cells.2, min.cells = 3, genes.use = NULL,
latent.vars = NULL, print.bar = TRUE, assay.type = "RNA")
Seurat object
Group 1 cells
Group 2 cells
Minimum number of cells expressing the gene in at least one of the two groups
Genes to use for test
Latent variables to test
Print progress bar
Type of assay to fetch data for (default is RNA)
Returns a p-value ranked matrix of putative differentially expressed genes.
# NOT RUN {
pbmc_small
# Note, expect warnings with example dataset due to min.cells threshold.
PoissonDETest(pbmc_small, cells.1 = WhichCells(object = pbmc_small, ident = 1),
cells.2 = WhichCells(object = pbmc_small, ident = 2))
# }
Run the code above in your browser using DataLab