Seurat (version 2.3.4)

FetchData: Access cellular data

Description

Retreives data (gene expression, PCA scores, etc, metrics, etc.) for a set of cells in a Seurat object

Usage

FetchData(object, vars.all = NULL, cells.use = NULL, use.imputed = FALSE,
  use.scaled = FALSE, use.raw = FALSE)

Arguments

object

Seurat object

vars.all

List of all variables to fetch

cells.use

Cells to collect data for (default is all cells)

use.imputed

For gene expression, use imputed values. Default is FALSE

use.scaled

For gene expression, use scaled values. Default is FALSE

use.raw

For gene expression, use raw values. Default is FALSE

Value

A data frame with cells as rows and cellular data as columns

Examples

# NOT RUN {
pc1 <- FetchData(object = pbmc_small, vars.all = 'PC1')
head(x = pc1)

# }