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Seurat (version 2.3.4)

ICALoad: ICA Gene Loadings Accessor Function

Description

Pull the ICA gene loadings matrix

Usage

ICALoad(object, dims.use = NULL, genes.use = NULL, use.full = FALSE)

Arguments

object

Seurat object

dims.use

Dimensions to include (default is all stored dims)

genes.use

Genes to include (default is all)

use.full

Return projected gene loadings (default is FALSE)

Value

ICA gene loading matrix for given genes and ICs

Examples

Run this code
# NOT RUN {
pbmc_small
pbmc_small <- RunICA(pbmc_small, ics.compute = 10, ics.print = 0)
head(ICALoad(pbmc_small))
# Optionally, you can specify subsets of dims or cells to use
ICALoad(pbmc_small, dims.use = 1:5, genes.use = pbmc_small@var.genes[1:5])

# }

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