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Get variable feature information from SCTAssay objects
# S3 method for SCTAssay
HVFInfo(object, selection.method, status = FALSE, ...)An object
Which method to pull. For HVFInfo and
VariableFeatures, choose one from one of the
following:
“vst”
“sctransform” or “sct”
“mean.var.plot”, “dispersion”, “mvp”, or “disp”
For SVFInfo and SpatiallyVariableFeatures, choose from:
“markvariogram”
“moransi”
Add variable status to the resulting data frame
Arguments passed to other methods
HVFInfo
# Get the HVF info directly from an SCTAssay object
pbmc_small <- SCTransform(pbmc_small)
HVFInfo(pbmc_small[["SCT"]], selection.method = 'sct')[1:5, ]
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