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Normalize Raw Data
LogNormalize(data, scale.factor = 10000, margin = 2L, verbose = TRUE, ...)# S3 method for data.frame
LogNormalize(data, scale.factor = 10000, margin = 2L, verbose = TRUE, ...)
# S3 method for V3Matrix
LogNormalize(data, scale.factor = 10000, margin = 2L, verbose = TRUE, ...)
# S3 method for default
LogNormalize(data, scale.factor = 10000, margin = 2L, verbose = TRUE, ...)
A matrix with the normalized and log-transformed data
Matrix with the raw count data
Scale the data; default is 1e4
Margin to normalize over
Print progress
Arguments passed to other methods
mat <- matrix(data = rbinom(n = 25, size = 5, prob = 0.2), nrow = 5)
mat
mat_norm <- LogNormalize(data = mat)
mat_norm
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