BridgeReferenceSet-class

BridgeReferenceSet

The BridgeReferenceSet Class
The BridgeReferenceSet is an output from PrepareBridgeReference

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Andrew Butler

Saket Choudhary

David Collins

Charlotte Darby

Jeff Farrell

Isabella Grabski

Christoph Hafemeister

Yuhan Hao

Austin Hartman

Jaison Jain

Longda Jiang

Madeline Kowalski

Skylar Li

Gesmira Molla

Efthymia Papalexi

Patrick Roelli

Rahul Satija

Karthik Shekhar

Anagha Shenoy

Avi Srivastava

Tim Stuart

Kristof Torkenczy

Brian Zhang

Shiwei Zheng

Satija Lab and Collaborators 

BridgeReferenceSet-class function

<dl>
<dt><code>bridge</code></dt>
<dd>The multi-omic object</dd></dl>
<dt><code>reference</code></dt>
<dd>The Reference object only containing bridge representation assay</dd>
<dt><code>params</code></dt>
<dd>A list of parameters used in the PrepareBridgeReference</dd>
<dt><code>command</code></dt>
<dd>Store log of parameters that were used</dd>

Slots

The BridgeReferenceSet Class
The BridgeReferenceSet is an output from PrepareBridgeReference — BridgeReferenceSet-class

<dl>
<dt><code>bridge</code></dt>
<dd>The multi-omic object</dd>


<dt><code>reference</code></dt>
<dd>The Reference object only containing bridge representation assay</dd>


<dt><code>params</code></dt>
<dd>A list of parameters used in the PrepareBridgeReference</dd>


<dt><code>command</code></dt>
<dd>Store log of parameters that were used</dd>


</dl>

The BridgeReferenceSet Class
The BridgeReferenceSet is an output from PrepareBridgeReference

BridgeReferenceSet-class: The BridgeReferenceSet Class The BridgeReferenceSet is an output from PrepareBridgeReference

Description

Arguments

Slots