Format10X_GeoJson_CellID

Format 10X Genomics GeoJson cell IDs

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Andrew Butler

Saket Choudhary

David Collins

Charlotte Darby

Jeff Farrell

Isabella Grabski

Christoph Hafemeister

Yuhan Hao

Austin Hartman

Jaison Jain

Longda Jiang

Madeline Kowalski

Skylar Li

Brian Zhang

Gesmira Molla

Efthymia Papalexi

Patrick Roelli

Rahul Satija

Karthik Shekhar

Anagha Shenoy

Avi Srivastava

Tim Stuart

Kristof Torkenczy

Shiwei Zheng

Satija Lab and Collaborators 

Format10X_GeoJson_CellID function

<dl><dt>ids</dt>
<dd>Vector of cell IDs to format</dd>
<dt>prefix</dt>
<dd>Optional prefix string</dd>
<dt>suffix</dt>
<dd>Optional suffix string</dd>
<dt>digits</dt>
<dd>Number of digits to zero-pad
A helper function to format cell IDs from the segmentation GeoJson to the same type as in the matrix.h5
The GeoJson has cell IDs as integers (eg 1). They need to be in the format cellid_000000001-1</dd></dl>

Arguments

Format 10X Genomics GeoJson cell IDs — Format10X_GeoJson_CellID

<dl>

<dt>ids</dt>
<dd>Vector of cell IDs to format</dd>


<dt>prefix</dt>
<dd>Optional prefix string</dd>


<dt>suffix</dt>
<dd>Optional suffix string</dd>


<dt>digits</dt>
<dd>Number of digits to zero-pad
A helper function to format cell IDs from the segmentation GeoJson to the same type as in the matrix.h5
The GeoJson has cell IDs as integers (eg 1). They need to be in the format cellid_000000001-1</dd>

</dl>

Format 10X Genomics GeoJson cell IDs

Format10X_GeoJson_CellID: Format 10X Genomics GeoJson cell IDs

Description

Usage

Value

Arguments