Read10X_HD_GeoJson

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Andrew Butler

Saket Choudhary

David Collins

Charlotte Darby

Jeff Farrell

Isabella Grabski

Christoph Hafemeister

Yuhan Hao

Austin Hartman

Jaison Jain

Longda Jiang

Madeline Kowalski

Skylar Li

Brian Zhang

Gesmira Molla

Efthymia Papalexi

Patrick Roelli

Rahul Satija

Karthik Shekhar

Anagha Shenoy

Avi Srivastava

Tim Stuart

Kristof Torkenczy

Shiwei Zheng

Satija Lab and Collaborators 

Read10X_HD_GeoJson function

<dl><dt>data.dir</dt>
<dd>Path to the directory containing matrix data</dd>
<dt>segmentation.type</dt>
<dd>Which segmentations to load, cell or nucleus. If using nucleus the full matrix from cells is still used</dd></dl>

Arguments

Load 10X Genomics GeoJson — Read10X_HD_GeoJson

<dl>

<dt>data.dir</dt>
<dd>Path to the directory containing matrix data</dd>


<dt>segmentation.type</dt>
<dd>Which segmentations to load, cell or nucleus. If using nucleus the full matrix from cells is still used</dd>

</dl>

Load 10X Genomics GeoJson

Read10X_HD_GeoJson: Load 10X Genomics GeoJson

Description

Usage

Value

Arguments