LoadAteraMolecules

Fetches transcript molecule coordinates for <code>genes</code> and adds them to
the molecule layer of a Seurat object created by
<code>LoadAtera(..., molecule.coordinates = TRUE)</code>, without
re-reading genes that have already been fetched (by this call or by
<code>genes</code> at load time). This is meant for interactive exploration,
where different genes are plotted one at a time and reloading the full
transcript table for each one would be wasteful.

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331>, Jiang, et al (2026) for more details.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Andrew Butler

Saket Choudhary

David Collins

Charlotte Darby

Jeff Farrell

Isabella Grabski

Christoph Hafemeister

Yuhan Hao

Austin Hartman

Jaison Jain

Longda Jiang

Madeline Kowalski

Skylar Li

Gesmira Molla

Efthymia Papalexi

Patrick Roelli

Rahul Satija

Karthik Shekhar

Anagha Shenoy

Avi Srivastava

Tim Stuart

Kristof Torkenczy

Brian Zhang

Shiwei Zheng

Satija Lab and Collaborators 

LoadAteraMolecules function

<dl><dt>object</dt>
<dd>A Seurat object created by <code>LoadAtera(..., molecule.coordinates = TRUE)</code></dd>
<dt>genes</dt>
<dd>Character vector of gene names to fetch</dd></dl>

Arguments

Fetch additional Atera transcript molecules for genes not yet loaded — LoadAteraMolecules

<dl>

<dt>object</dt>
<dd>A Seurat object created by <code>LoadAtera(..., molecule.coordinates = TRUE)</code></dd>


<dt>genes</dt>
<dd>Character vector of gene names to fetch</dd>

</dl>

Fetch additional Atera transcript molecules for genes not yet loaded

LoadAteraMolecules: Fetch additional Atera transcript molecules for genes not yet loaded

Description

Usage

Value

Arguments