Read10X_Coordinates

Load 10X Genomics Visium Tissue Positions

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331>, Jiang, et al (2026) for more details.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Andrew Butler

Saket Choudhary

David Collins

Charlotte Darby

Jeff Farrell

Isabella Grabski

Christoph Hafemeister

Yuhan Hao

Austin Hartman

Jaison Jain

Longda Jiang

Madeline Kowalski

Skylar Li

Gesmira Molla

Efthymia Papalexi

Patrick Roelli

Rahul Satija

Karthik Shekhar

Anagha Shenoy

Avi Srivastava

Tim Stuart

Kristof Torkenczy

Brian Zhang

Shiwei Zheng

Satija Lab and Collaborators 

Read10X_Coordinates function

<dl><dt>filename</dt>
<dd>Path to a <code>tissue_positions_list.csv</code>,
<code>tissue_positions.csv</code>, or <code>tissue_positions.parquet</code> file</dd>
<dt>filter.matrix</dt>
<dd>Filter spot/feature matrix to only include spots that
have been determined to be over tissue</dd>
<dt>cells</dt>
<dd>Optional barcode vector to retain. <code>NULL</code> reads all
eligible positions. Filters are applied after reading the table.</dd></dl>

Arguments

Load 10X Genomics Visium Tissue Positions — Read10X_Coordinates

<dl>

<dt>filename</dt>
<dd>Path to a <code>tissue_positions_list.csv</code>,
<code>tissue_positions.csv</code>, or <code>tissue_positions.parquet</code> file</dd>


<dt>filter.matrix</dt>
<dd>Filter spot/feature matrix to only include spots that
have been determined to be over tissue</dd>


<dt>cells</dt>
<dd>Optional barcode vector to retain. <code>NULL</code> reads all
eligible positions. Filters are applied after reading the table.</dd>

</dl>

Load 10X Genomics Visium Tissue Positions

Read10X_Coordinates: Load 10X Genomics Visium Tissue Positions

Description

Usage

Value

Arguments