.GetConsensusFeatures

Returns the most frequently observed features in `features_by_layer`. If 
two features are observed at the same frequency their median index will be 
used to break the tie. If `nfeatures` is not specified, all features in 
`common_features` are returned.

internal

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
more details.

Paul Hoffman

SeuratObject

Data Structures for Single Cell Data

Rahul Satija

David Collins

Yuhan Hao

Austin Hartman

Gesmira Molla

Andrew Butler

Tim Stuart

Madeline Kowalski

Saket Choudhary

Skylar Li

Longda Jiang

Anagha Shenoy

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

.GetConsensusFeatures function

<dl><dt>features_by_layer</dt>
<dd>A 2D named vector containing mapping each layer
to it's corresponding variable features.</dd>
<dt>common_features</dt>
<dd>The intersection of features across all layers.</dd>
<dt>nfeatures</dt>
<dd>The number of variable features to return.</dd></dl>

Arguments

Returns the most frequently observed features in `features_by_layer`. If 
two features are observed at the same frequency their median index will be 
used to break the tie. If `nfeatures` is not specified, all features in 
`common_features` are returned. — .GetConsensusFeatures

<dl>

<dt>features_by_layer</dt>
<dd>A 2D named vector containing mapping each layer
to it's corresponding variable features.</dd>


<dt>common_features</dt>
<dd>The intersection of features across all layers.</dd>


<dt>nfeatures</dt>
<dd>The number of variable features to return.</dd>

</dl>

Returns the most frequently observed features in `features_by_layer`. If 
two features are observed at the same frequency their median index will be 
used to break the tie. If `nfeatures` is not specified, all features in 
`common_features` are returned.

.GetConsensusFeatures: Returns the most frequently observed features in `features_by_layer`. If two features are observed at the same frequency their median index will be used to break the tie. If `nfeatures` is not specified, all features in `common_features` are returned.

Description

Usage

Arguments