Centroids-class

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
more details.

Paul Hoffman

SeuratObject

Data Structures for Single Cell Data

Rahul Satija

David Collins

Yuhan Hao

Austin Hartman

Gesmira Molla

Andrew Butler

Tim Stuart

Madeline Kowalski

Saket Choudhary

Skylar Li

Longda Jiang

Anagha Shenoy

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

Centroids-class function

<dl>
<dt><code>cells</code></dt>
<dd>(<code><a href="/link/character%20%5Bn%5D?package=SeuratObject&version=5.2.0" data-mini-rdoc="SeuratObject::character [n]">character [n]</a></code>) A vector of cell
names; there should be as many cell names as there are points and no
duplicate names</dd></dl>
<dt><code>nsides</code></dt>
<dd>(<code><a href="/link/integer%20%5B1L%5D?package=SeuratObject&version=5.2.0" data-mini-rdoc="SeuratObject::integer [1L]">integer [1L]</a></code>) The number of sides
to draw when plotting centroids; must be either <code>0L</code> for circles or
greater than 3</dd>
<dt><code>radius</code></dt>
<dd>(<code><a href="/link/numeric%20%5B1L%5D?package=SeuratObject&version=5.2.0" data-mini-rdoc="SeuratObject::numeric [1L]">numeric [1L]</a></code>) The radius of the
shape when plotting the centroids</dd>
<dt><code>theta</code></dt>
<dd>(<code><a href="/link/numeric%20%5B1L%5D?package=SeuratObject&version=5.2.0" data-mini-rdoc="SeuratObject::numeric [1L]">numeric [1L]</a></code>) The angle in degrees
to adjust the shape when plotting the centroids</dd>

Slots

The Centroids Class — Centroids-class

<dl>
<dt><code>cells</code></dt>
<dd>(<code><a href='https://rdrr.io/r/base/character.html'>character [n]</a></code>) A vector of cell
names; there should be as many cell names as there are points and no
duplicate names</dd>


<dt><code>nsides</code></dt>
<dd>(<code><a href='https://rdrr.io/r/base/integer.html'>integer [1L]</a></code>) The number of sides
to draw when plotting centroids; must be either <code>0L</code> for circles or
greater than 3</dd>


<dt><code>radius</code></dt>
<dd>(<code><a href='https://rdrr.io/r/base/numeric.html'>numeric [1L]</a></code>) The radius of the
shape when plotting the centroids</dd>


<dt><code>theta</code></dt>
<dd>(<code><a href='https://rdrr.io/r/base/numeric.html'>numeric [1L]</a></code>) The angle in degrees
to adjust the shape when plotting the centroids</dd>


</dl>

The <code>Centroids</code> Class

Centroids-class: The `Centroids` Class

Description

Arguments

Slots

See Also