Crop

Crop.FOV

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
more details.

Paul Hoffman

SeuratObject

Data Structures for Single Cell Data

Rahul Satija

David Collins

Yuhan Hao

Austin Hartman

Gesmira Molla

Andrew Butler

Tim Stuart

Madeline Kowalski

Saket Choudhary

Skylar Li

Longda Jiang

Anagha Shenoy

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

Crop function

<dl><dt>object</dt>
<dd>An object</dd>
<dt>x, y</dt>
<dd>Range to crop x/y limits to; if <code>NULL</code>, uses full range of
<code>x</code>/<code>y</code></dd>
<dt>coords</dt>
<dd>Coordinate system to execute crop; choose from:<ul>
<li>&#8220;<code>plot</code>&#8221;: Coordinates as shown when plotting</li>
<li>&#8220;<code>tissue</code>&#8221;: Coordinates from
 <code>GetTissueCoordinates</code></li>
</ul></dd>
<dt>...</dt>
<dd>Arguments passed to other methods</dd></dl>

Arguments

Crop Coordinates — Crop

<dl>

<dt>object</dt>
<dd>An object</dd>


<dt>x, y</dt>
<dd>Range to crop x/y limits to; if <code>NULL</code>, uses full range of
<code>x</code>/<code>y</code></dd>


<dt>coords</dt>
<dd>Coordinate system to execute crop; choose from:<ul>
<li>&#8220;<code>plot</code>&#8221;: Coordinates as shown when plotting</li>
<li>&#8220;<code>tissue</code>&#8221;: Coordinates from
 <code>GetTissueCoordinates</code></li>
</ul></dd>


<dt>...</dt>
<dd>Arguments passed to other methods</dd>

</dl>

Crop Coordinates

Crop: Crop Coordinates

Description

Usage

Value

Arguments