subset.StdAssay

internal

Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
more details.

Paul Hoffman

SeuratObject

Data Structures for Single Cell Data

Rahul Satija

David Collins

Yuhan Hao

Austin Hartman

Gesmira Molla

Andrew Butler

Tim Stuart

Madeline Kowalski

Saket Choudhary

Skylar Li

Longda Jiang

Anagha Shenoy

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

subset.StdAssay function

<dl><dt>x</dt>
<dd>An <code>Assay5</code> object</dd>
<dt>cells</dt>
<dd>Cell names</dd>
<dt>features</dt>
<dd>Feature names</dd>
<dt>layers</dt>
<dd>Layer to keep; defaults to all layers</dd>
<dt>...</dt>
<dd>Ignored</dd></dl>

Arguments

Subset an Assay — subset.StdAssay

<dl>

<dt>x</dt>
<dd>An <code>Assay5</code> object</dd>


<dt>cells</dt>
<dd>Cell names</dd>


<dt>features</dt>
<dd>Feature names</dd>


<dt>layers</dt>
<dd>Layer to keep; defaults to all layers</dd>


<dt>...</dt>
<dd>Ignored</dd>

</dl>

Subset an Assay

subset.StdAssay: Subset an Assay

Description

Usage

Value

Arguments

See Also