ShortRead (version 1.30.0)

FASTQ input and manipulation

Description

This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.

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Version

1.30.0

License

Artistic-2.0

Last Published

January 1st, 1970

Functions in ShortRead (1.30.0)