Conceptually, this class has reads from a single experiment
represented as a long vector, ordered by sample. The readCount
slot indicates the number of reads in each sample, so that the sum of
readCount
is the total number of reads in the experiment. The
readIndex
field is a light-weight indicator of which reads from
all those available that are currently referenced by the SRSet
.
RocheSet
. sourcePath
:"ExperimentPath"
,
containing the directory path where sequence files can be found.readIndex
:"integer"
indicating
specific sequences included in the experiment.readCount
:"integer"
containing
the number of reads in each sample included in the experiment. The
sum of this vector is the total number of reads.phenoData
:"AnnotatedDataFrame"
describing each sample in the experiment. The number of rows of
phenoData
equals the number of elements in
readCount
.readData
:"AnnotatedDataFrame"
containing annotations on all reads.".ShortReadBase"
, directly.signature(object = "SRSet")
: return the
ExperimentPath
associated with this object.signature(object = "SRSet")
: return the
phenoData
associated with this object.signature(object="SRSet")
:signature(object="SRSet")
:signature(object="SRSet")
:signature(object="SRSet")
: Retrieve the
corresponding slot from object
.signature(object = "SRSet")
: display the contents
of this object.signature(x = "SRSet")
: provide more
extensive information on the object.