ShortRead (version 1.30.0)

ShortReadBase-package:

FASTQ input and manipulation.

Description

This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.

Arguments

Details

See packageDescription('ShortRead')