ShortReadQA-class: Quality assessment of fastq files and ShortReadQ objects
Description
These classes contains a list-like structure with summary descriptions
derived from visiting one or more fastq files, or from a
ShortReadQ
object.
Objects from the Class
Objects of the class are usually produced by a qa
method. Slots
.srlist
:- Object of class
"list"
, containing
data frames or lists of data frames summarizing the results of
qa.
Extends
Class "SRList"
, directly.
Class ".QA"
, directly.
Class ".SRUtil"
, by class "SRList", distance 2.
Class ".ShortReadBase"
, by class ".QA", distance 2.Methods
Accessor methods are inherited from the SRList
class. Additional methods defined on this class are:
- report
signature(x="FastqQA", ..., dest=tempfile(), type="html")
:
produces HTML files summarizing QA results. dest
should be
a directory. - report
signature(x="ShortReadQA", ..., dest=tempfile(), type="html")
:
produces HTML files summarizing QA results. dest
should be
a directory.