SolexaExportQA-class: (Legacy) Quality assessment summaries from Solexa export and
realign files
Description
This class contains a list-like structure with summary descriptions
derived from visiting one or more Solexa ‘export’ or
‘realign’ files.
Objects from the Class
Objects of the class are usually produced by a qa
method. Slots
.srlist:- Object of class
"list", containing
data frames or lists of data frames summarizing the results of
qa.
Extends
Class "SRList", directly.
Class ".QA", directly.
Class ".SRUtil", by class "SRList", distance 2.
Class ".ShortReadBase", by class ".QA", distance 2.Methods
Accessor methods are inherited from the SRList
class. Additional methods defined on this class are:
- report
signature(x="SolexaExportQA", ..., dest=tempfile(), type="html"):
produces HTML files summarizing QA results. dest should be
a directory.- report
signature(x="SolexaExportQA", ..., dest=tempfile(), type="pdf"):
(deprecated; use type="html" instead) produces a pdf file
summarizing QA results. dest should be a file.- report
signature(x="SolexaRealignQA", ..., dest=tempfile(), type="html"):
produces HTML files summarizing QA results. dest should be
a directory.