readBfaToc

bfafile


As <code><a rd-options="" href="/link/coverage?package=ShortRead&version=1.30.0" data-mini-rdoc="ShortRead::coverage">coverage</a></code> needs to know the lengths of the reference sequences,
this function is provided which extracts this information from
a .bfa file (Maq's "binary FASTA" format).


This package implements sampling, iteration, and input of
FASTQ files. The package includes functions for filtering and
trimming reads, and for generating a quality assessment report.
Data are represented as DNAStringSet-derived objects, and
easily manipulated for a diversity of purposes.  The package
also contains legacy support for early single-end, ungapped
alignment formats.

Bioconductor Package Maintainer

ShortRead

FASTQ input and manipulation

readBfaToc function

As <code><a href="coverage" rd-options="">coverage</a></code> needs to know the lengths of the reference sequences,
this function is provided which extracts this information from
a .bfa file (Maq's "binary FASTA" format).

readBfaToc: (Legacy) Get a list of the sequences in a Maq .bfa file

Description

Usage

Arguments

Value