SiFINeT (version 1.13)

create_SiFINeT_object: create_SiFINeT_object

Description

The function classifies count data based on thresholds defined by quantile regression

Usage

create_SiFINeT_object(
  counts,
  gene.name = NULL,
  meta.data = NULL,
  data.name = NULL,
  sparse = FALSE,
  rowfeature = TRUE
)

Value

a SiFINeT object

Arguments

counts

count matrix

gene.name

name of the features

meta.data

data.frame of meta data

data.name

name of dataset

sparse

whether the count matrix should be analyzed as sparse matrix

rowfeature

whether the count matrix is feature (row) by cell (column)