SigCheck (version 1.0.2)

nkiResults: Precomputed list of results for a call to sigCheck using the breastCancerNKI dataset.

Description

This object represents the results lists returned by a call to sigCheck. It is used by the vignette accompanying the SigCheck package as an example result. It was derived by running the code in the example below.

Usage

data(nkiResults)

Examples

## Not run: 
# # This is how nkiResults is built
# library(breastCancerNKI)
# data(nki)
# nki = nki[,!is.na(nki$e.dmfs)]
# data(knownSignatures)
# nkiResults = sigCheck(nki, classes="e.dmfs", annotation="HUGO.gene.symbol",
#                    signature=knownSignatures$cancer$VANTVEER,
#                    validationSamples=275:319, 
#                    knownSignatures="cancer",nIterations=1000)
# ## End(Not run)

# Example usage of nkiResults
data(nkiResults)
nkiResults$checkClassifier
sigCheckPlot(nkiResults$checkRandom)