SigCheck (version 2.4.0)

classifyResults: Precomputed list of results for a calls to sigCheckRandom and sigCheckKnown using the breastCancerNKI dataset.

Description

This object represents the results lists returned by calls to sigCheckRandom and sigCheckKnown. It is used by the vignette accompanying the SigCheck package as an example result. It was derived by running the code in the example below. It loads to object, slassifyRandom and classifyKnown.

Usage

data(classifyResults)

Examples

## Not run: 
# # This is how classifyResults is built
# library(breastCancerNKI)
# data(nki)
# nki = nki[,!is.na(nki$e.dmfs)]
# data(knownSignatures)
# check <- sigCheck(nki, classes="e.dmfs",
#                   signature=knownSignatures$cancer$VANTVEER,
#                   annotation="HUGO.gene.symbol",
#                   validationSamples=101:ncol(nki),
#                   scoreMethod="classifier")
#                   
# classifyRandom <- sigCheckRandom(check, iterations=1000)
# classifyKnown <- sigCheckKnown(check)
# ## End(Not run)

# Example usage of classifyResults
data(classifyResults)
par(mfrow=c(1,2))
sigCheckPlot(classifyRandom, classifier=TRUE)
sigCheckPlot(classifyKnown, classifier=TRUE)