Signac (version 0.2.4)

FractionCountsInRegion: FractionCountsInRegion

Description

Find the fraction of counts per cell that overlap a given set of genomic ranges

Usage

FractionCountsInRegion(object, assay, regions, sep = c("-", "-"), ...)

Arguments

object

A Seurat object

assay

Name of assay to use

regions

A GRanges object containing a set of genomic regions

sep

The separator used to separate genomic coordinate information in the assay feature names

...

Additional arguments passed to CountsInRegion

Value

Returns a numeric vector

Examples

# NOT RUN {
FractionCountsInRegion(
  object = atac_small,
  assay = 'bins',
  regions = blacklist_hg19
)
# }

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