Signac (version 0.2.4)

UnifyPeaks: Unify genomic ranges

Description

Create a unified set of non-overlapping genomic ranges from multiple Seurat objects containing single-cell chromatin data.

Usage

UnifyPeaks(object.list, mode = "reduce", sep = c(":", "-"))

Arguments

object.list

A list of Seurat objects

mode

Function to use when combining genomic ranges. Can be "reduce" (default) or "disjoin". See reduce and disjoin for more information on these functions.

sep

Separators to use to extract genomic ranges from object row names. To specify different separators for different objects, pass a list of length equal to the length of object.list.

Value

Returns a GRanges object

Examples

# NOT RUN {
UnifyPeaks(object.list = list(atac_small, atac_small))
# }