Signac (version 0.2.5)

ClosestFeature: Closest Feature

Description

Find the closest feature to a given set of genomic regions

Usage

ClosestFeature(regions, annotation, ...)

Arguments

regions

A set of genomic regions to query

annotation

A GRanges object containing annotation information.

...

Additional arguments passed to StringToGRanges

Value

Returns a dataframe with the name of each region, the closest feature in the annotation, and the distance to the feature.

Examples

# NOT RUN {
ClosestFeature(
  regions = head(rownames(atac_small)),
  annotation = StringToGRanges(
  head(rownames(atac_small)),
  sep = c(':', '-')),
  sep = c(":", "-")
)
# }