FRiP

object

Name of the assay containing a peak x cell matrix

assay

Name of a metadata column containing the total number
of sequenced fragments for each cell. This can be computed using the
<code><a rd-options="" href="/link/CountFragments?package=Signac&version=1.1.0" data-mini-rdoc="Signac::CountFragments">CountFragments</a></code> function.

total.fragments

Name of column in metadata to store the FRiP information.

col.name

verbose

Calculate fraction of reads in peaks per cell

A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart and Butler et al. (2019) <doi:10.1016/j.cell.2019.05.031>.

Tim Stuart

Signac

Analysis of Single-Cell Chromatin Data

Avi Srivastava

Paul Hoffman

Rahul Satija

FRiP function

Name of a metadata column containing the total number
of sequenced fragments for each cell. This can be computed using the
<code><a rd-options='' href='CountFragments'>CountFragments</a></code> function.

Last chance! 50% off unlimited learning

FRiP: Calculate fraction of reads in peaks per cell

Description

Usage

Arguments

Value

Examples