Signac is a comprehensive R package for the analysis of single-cell
chromatin data. Signac includes functions for quality control,
normalization, dimension reduction, clustering, differential activity,
and more.
We welcome contributions to the Signac package. Please see the
contribution guide
for more information.
Getting help
If you encounter a bug or have a feature request, please open an
issue.
If you would like to discuss questions related to single-cell analysis,
you can open a
discussion.
Roadmap
Signac runs on a quarterly release schedule. Additional releases will be
scheduled in the case of urgent bug fixes. The development roadmap can be viewed
on GitHub here.
Citing Signac
If you use the Signac package in your work please cite Stuart et
al. 2021
@ARTICLE{signac,
title = "Single-cell chromatin state analysis with Signac",
author = "Stuart, Tim and Srivastava, Avi and Madad, Shaista and Lareau,
Caleb A and Satija, Rahul",
journal = "Nat. Methods",
publisher = "Nature Publishing Group",
pages = "1--9",
month = nov,
year = 2021,
url = "https://www.nature.com/articles/s41592-021-01282-5",
language = "en"
}