Signac (version 1.6.0)

granges-methods: Access genomic ranges for ChromatinAssay objects

Description

Methods for accessing GRanges object information stored in a ChromatinAssay object.

Usage

# S4 method for ChromatinAssay
granges(x, use.names = TRUE, use.mcols = FALSE, ...)
# S4 method for Seurat
granges(x, use.names = TRUE, use.mcols = FALSE, ...)

Arguments

x

A ChromatinAssay object

use.names

Whether the names on the genomic ranges should be propagated to the returned object.

use.mcols

Not supported for ChromatinAssay objects

...

Additional arguments

Value

Returns a GRanges object

Functions

• granges,Seurat-method: method for Seurat objects

See Also

• granges in the GenomicRanges package.

• ChromatinAssay-class

Examples

# NOT RUN {
granges(atac_small)
# }