SimBIID (version 0.2.1)

Simulation-Based Inference Methods for Infectious Disease Models

Description

Provides some code to run simulations of state-space models, and then use these in the Approximate Bayesian Computation Sequential Monte Carlo (ABC-SMC) algorithm of Toni et al. (2009) and a bootstrap particle filter based particle Markov chain Monte Carlo (PMCMC) algorithm (Andrieu et al., 2010 ). Also provides functions to plot and summarise the outputs.

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install.packages('SimBIID')

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176

Version

0.2.1

License

GPL (>= 3)

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Last Published

February 4th, 2021

Functions in SimBIID (0.2.1)