SimInf (version 11.1.0)

add_spatial_coupling_to_ldata: Add spatial coupling information to local data

Description

A utility function to augment local model parameters (ldata) with spatial coupling data from neighboring nodes.

Usage

add_spatial_coupling_to_ldata(
  x,
  y,
  cutoff,
  ldata = NULL,
  min_dist = NULL,
  na_fail = TRUE
)

Value

A numeric matrix with the same number of rows as

ldata, but with additional columns containing the neighbor indices and distances as described in the

‘Output Format’ section.

Arguments

x

Numeric vector of projected x coordinates for each node.

y

Numeric vector of projected y coordinates for each node.

cutoff

Numeric scalar. The maximum distance for considering two nodes as neighbors. Pairs of nodes farther apart than this value are excluded from the neighbor data.

ldata

local data for the nodes. Can either be specified as a data.frame with one row per node. Or as a matrix where each column ldata[, j] contains the local data vector for the node j. The local data vector is passed as an argument to the transition rate functions and the post time step function.

min_dist

Numeric scalar. The value to use for the distance between two nodes if their coordinates are identical (distance = 0). This prevents division by zero errors in downstream calculations (e.g., inverse distance weighting). If NULL (default) and identical coordinates are found, an error is raised.

na_fail

Logical. If TRUE (default), missing values (NA) in x or y will raise an error. If FALSE, distances involving missing coordinates are set to zero.

Details

The function calculates distances between nodes based on projected coordinates (x, y) and appends neighbor data to the ldata matrix for each node.

Output Format: The returned matrix has the same number of rows as the input ldata. The columns are organized as follows:

• Local Parameters: The first \(n\) columns correspond to the original local parameters passed in ldata.

• Neighbor Pairs: Following the local parameters, the data is stored as pairs of columns: (neighbor_index, distance). The neighbor_index is a zero-based index of the neighbor node. The distance is the Euclidean distance to that neighbor.

• Stop Marker: Each node's neighbor list is terminated by a pair (-1, 0) in the position where the next neighbor_index would appear. This marker appears exactly once per node, immediately after the last neighbor.

See Also

distance_matrix for computing pairwise distances between nodes, and edge_properties_to_matrix for a similar utility that converts edge properties to a matrix format.

Examples

## Generate a 5 x 5 grid of nodes separated by 1000m.
nodes <- expand.grid(
  x = seq(from = 0, to = 4000, by = 1000),
  y = seq(from = 0, to = 4000, by = 1000)
)

## Create local data with one parameter per node.
ldata <- matrix(0.1, nrow = 1, ncol = nrow(nodes))

## Add spatial coupling with a 2500m cutoff.
ldata_augmented <- add_spatial_coupling_to_ldata(
  x = nodes$x,
  y = nodes$y,
  cutoff = 2500,
  ldata = ldata
)

## Inspect the result for the first node.
ldata_augmented[, 1]