Determine total number of alleles shared by affecteds in a family
affected_allele_count(ped_haps, hap_map, ped_file)sparse matrix. The familial haplotype data.
data frame. Mapping data: maps individuals in ped_file to the haplotypes in ped_haps.
data frame. Pedigree file, a for single family; i.e. not an entire study of ped files.
A list of sharing counts, in the same order as the SNVs in ped_haps.