get_term_marginals

Calculate marginal probability of terms inclusion in <code>phi</code> from <code>sim_reg_out</code> object

Similarity regression,
evaluating the probability of association between sets of ontological terms
and binary response vector. A no-association model is compared with one in which
the log odds of a true response is linked to the semantic similarity
between terms and a latent characteristic ontological profile - 'Phenotype Similarity Regression for Identifying the Genetic Determinants of Rare Diseases', Greene et al 2016 <doi:10.1016/j.ajhg.2016.01.008>.

Daniel Greene

SimReg

Similarity Regression

get_term_marginals function

<dl><dt>sim_reg_out</dt>
<dd>Object of class <code>sim_reg_output</code>.</dd></dl>

Arguments

Calculate marginal probability of terms inclusion in phi from sim_reg_out object — get_term_marginals

<dl>

<dt>sim_reg_out</dt>
<dd>Object of class <code>sim_reg_output</code>.</dd>

</dl>

get_term_marginals: Calculate marginal probability of terms inclusion in `phi` from `sim_reg_out` object

Description

Usage

Value

Arguments