prob_association

Calculate probability of association between <code>y</code> and <code>x</code>

Similarity regression,
evaluating the probability of association between sets of ontological terms
and binary response vector. A no-association model is compared with one in which
the log odds of a true response is linked to the semantic similarity
between terms and a latent characteristic ontological profile - 'Phenotype Similarity Regression for Identifying the Genetic Determinants of Rare Diseases', Greene et al 2016 <doi:10.1016/j.ajhg.2016.01.008>.

Daniel Greene

SimReg

Similarity Regression

prob_association function

<dl><dt>...</dt>
<dd>Arguments to pass to <code>log_BF</code>.</dd>
<dt>prior</dt>
<dd>Numeric value determing prior probability that <code>gamma=1</code>.</dd></dl>

Arguments

Calculate probability of association between y and x — prob_association

<dl>

<dt>...</dt>
<dd>Arguments to pass to <code>log_BF</code>.</dd>


<dt>prior</dt>
<dd>Numeric value determing prior probability that <code>gamma=1</code>.</dd>

</dl>

prob_association: Calculate probability of association between `y` and `x`

Description

Usage

Value

Arguments