Constructs a forest-like plot of signed log10 p-values,
possibly adjusted for multiple comparisons adjust
can be one of "holm", "hochberg", "hommel", "bonferroni",
"BH", "BY", "fdr", "none".
plotlrt(lr, adjust = "fdr", thres = 0.1, trunc = 1e-06, groups = NULL)output from lrtest, with returnall=FALSE
character, passed along to
p.adjust, see below
numeric genes with adjusted pvalues
above this value are not depicted
numeric p values below this value are
truncated at this value
character grouping value. If
provided, must match groups argument passed to lrtest.
Plots done separately for each group.
Constructs a dotplot