get_experiment

This function loads the differential expression data (log2 foldchanges and FDR values) for a given dataset id

Allows search and visualisation of a collection of uniformly processed skeletal transcriptomic datasets. Includes methods to identify datasets where genes of interest are differentially expressed and find datasets with a similar gene expression pattern to a query dataset Soul J, Hardingham TE, Boot-Handford RP, Schwartz JM (2019) <doi:10.1093/bioinformatics/bty947>.

Jamie Soul

SkeletalVis

Exploration and Visualisation of Skeletal Transcriptomics Data

get_experiment function

<dl><dt>skeletalvis</dt>
<dd>The path to the SkeletalVis folder.</dd>
<dt>dataset_id</dt>
<dd>The dataset ID to extract results for.</dd></dl>

Arguments

Get the gene differential expression results for an experiment of interest — get_experiment

<dl>

<dt>skeletalvis</dt>
<dd>The path to the SkeletalVis folder.</dd>


<dt>dataset_id</dt>
<dd>The dataset ID to extract results for.</dd>

</dl>

get_experiment: Get the gene differential expression results for an experiment of interest

Description

Usage

Value

Arguments

Examples