query

An example gene expression dataset comparing damaged versus intact osteoarthritic cartilage.

datasets

Allows search and visualisation of a collection of uniformly processed skeletal transcriptomic datasets. Includes methods to identify datasets where genes of interest are differentially expressed and find datasets with a similar gene expression pattern to a query dataset Soul J, Hardingham TE, Boot-Handford RP, Schwartz JM (2019) <doi:10.1093/bioinformatics/bty947>.

Jamie Soul

SkeletalVis

Exploration and Visualisation of Skeletal Transcriptomics Data

query function

## `query`
A data frame with 42,459 rows and 2 columns:<dl>
 <dt>ID</dt>
<dd>Human Gene Symbol</dd> <dt>`E-MTAB-4304_1`</dt>
<dd>log2 fold change</dd>
</dl>

Format

Example gene expression dataset — query

## `query`
A data frame with 42,459 rows and 2 columns:<dl>
 <dt>ID</dt>
<dd>Human Gene Symbol</dd>

 <dt>`E-MTAB-4304_1`</dt>
<dd>log2 fold change</dd>


</dl>

query: Example gene expression dataset

Description

Usage

Arguments

Format

Examples