view_prioritised_oagenes

Retrieves the machine learning model prioritised table of osteoarthritis joint damage in animals.
Genes are ranked by their probability to cause an OA damage phenotype when experimentally perturbed.
The predicted direction of effect and druggability of that gene is also provided.

Allows search and visualisation of a collection of uniformly processed skeletal transcriptomic datasets. Includes methods to identify datasets where genes of interest are differentially expressed and find datasets with a similar gene expression pattern to a query dataset Soul J, Hardingham TE, Boot-Handford RP, Schwartz JM (2019) <doi:10.1093/bioinformatics/bty947>.

Jamie Soul

SkeletalVis

Exploration and Visualisation of Skeletal Transcriptomics Data

view_prioritised_oagenes function

<dl><dt>skeletalvis</dt>
<dd>The path to the SkeletalVis folder.</dd></dl>

Arguments

View prioritised osteoarthritis associated genes — view_prioritised_oagenes

<dl>

<dt>skeletalvis</dt>
<dd>The path to the SkeletalVis folder.</dd>

</dl>

view_prioritised_oagenes: View prioritised osteoarthritis associated genes

Description

Usage

Value

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Examples