mode

This function finds the mode of a vector

This takes spatial single-cell-type RNA-seq data (specifically designed for Slide-seq v2) that calls copy number alterations (CNAs) using pseudo-spatial binning, clusters cellular units (e.g. beads) based on CNA profile, and visualizes spatial CNA patterns. Documentation about 'SlideCNA' is included in the the pre-print by Zhang et al. (2022, <doi:10.1101/2022.11.25.517982>). The package 'enrichR' (>= 3.0), conditionally used to annotate SlideCNA-determined clusters with gene ontology terms, can be installed at <https://github.com/wjawaid/enrichR> or with install_github("wjawaid/enrichR").

Diane Zhang

SlideCNA

Calls Copy Number Alterations from Slide-Seq Data

Johanna Klughammer

Jan Watter

Broad Institute of MIT and Harvard 

mode function

<dl><dt>x</dt>
<dd>vector (column in data.table) to calculate the mode from</dd></dl>

Arguments

Subfunction of long_to_bin() that finds mode of vector/column — mode

<dl>

<dt>x</dt>
<dd>vector (column in data.table) to calculate the mode from</dd>

</dl>

mode: Subfunction of long_to_bin() that finds mode of vector/column

Description

Usage

Value

Arguments