reexports

%&gt;%

These objects are imported from other packages. Follow the links
below to see their documentation.
<dl>
 <dt>data.table</dt>
<dd><code>:=</code></dd>
 <dt>magrittr</dt>
<dd><code>%&gt;%</code></dd>
</dl>

internal

This takes spatial single-cell-type RNA-seq data (specifically designed for Slide-seq v2) that calls copy number alterations (CNAs) using pseudo-spatial binning, clusters cellular units (e.g. beads) based on CNA profile, and visualizes spatial CNA patterns. Documentation about 'SlideCNA' is included in the the pre-print by Zhang et al. (2022, <doi:10.1101/2022.11.25.517982>). The package 'enrichR' (>= 3.0), conditionally used to annotate SlideCNA-determined clusters with gene ontology terms, can be installed at <https://github.com/wjawaid/enrichR> or with install_github("wjawaid/enrichR").

Diane Zhang

SlideCNA

Calls Copy Number Alterations from Slide-Seq Data

Johanna Klughammer

Jan Watter

Broad Institute of MIT and Harvard 

reexports function

These objects are imported from other packages. Follow the links
below to see their documentation.
<dl>
 <dt>data.table</dt>
<dd><code>:=</code></dd>


 <dt>magrittr</dt>
<dd><code>%&gt;%</code></dd>


</dl>

Pipe — reexports

Pipe

reexports: Pipe

Description

Arguments