Markers_list_PCTAM

<p>A dataset containing marker genes for different Macrophage subtypes from the article "Macrophage diversity in cancer revisited in the era of single-cell omics"</p>

datasets

Annotates single-cell and spatial-transcriptomic (ST) data using marker datasets. Supports unified markers list ('Markers_list') creation from built-in databases (e.g., 'Cellmarker2', 'PanglaoDB', 'scIBD', 'TCellSI', 'PCTIT', 'PCTAM'), Seurat objects, or user-supplied Excel files. SlimR can predict calculation parameters by adaptive machine learning algorithms, and based on Markers_list, calculate gene expression of different cell types and predict annotation information, and calculate corresponding AUC and annotate it, then verify it. At the same time, it can calculate gene expression corresponding to the cell type to generate a reference map for manual annotation (e.g., 'Heat Map', 'Feature Plots', 'Combined Plots'). For more details, see Kabacoff (2020, ISBN:9787115420572).

Zhao qing Wang

SlimR

Adaptive Machine Learning-Powered, Context-Matching Tool for
Single-Cell and Spatial Transcriptomics Annotation

Zhaoqing Wang

Markers_list_PCTAM function

Format

List of Macrophage subtype markers in the article "Macrophage diversity in cancer revisited in the era of single-cell omics" — Markers_list_PCTAM

List of Macrophage subtype markers in the article "Macrophage diversity in cancer revisited in the era of single-cell omics"

Markers_list_PCTAM: List of Macrophage subtype markers in the article "Macrophage diversity in cancer revisited in the era of single-cell omics"

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