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SmartSVA (version 0.1.3)

Fast and Robust Surrogate Variable Analysis

Description

Introduces a fast and efficient Surrogate Variable Analysis algorithm that captures variation of unknown sources (batch effects) for high-dimensional data sets. The algorithm is built on the 'irwsva.build' function of the 'sva' package and proposes a revision on it that achieves an order of magnitude faster running time while trading no accuracy loss in return.

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Version

Install

install.packages('SmartSVA')

Monthly Downloads

317

Version

0.1.3

License

GPL-3

Maintainer

Jun Chen

Last Published

May 28th, 2017

Functions in SmartSVA (0.1.3)

smartsva.cpp

Fast and robust surrogate variable analysis.