params

The parameters below are commonly used throughout
the SomaDataIO package.

Load and export 'SomaScan' data via the
'Standard BioTools, Inc.' structured text file
called an ADAT ('*.adat'). For file format see
<https://github.com/SomaLogic/SomaLogic-Data/blob/main/README.md>.
The package also exports auxiliary functions for
manipulating, wrangling, and extracting relevant
information from an ADAT object once in memory.

Caleb Scheidel

SomaDataIO

Input/Output 'SomaScan' Data

Stu Field

Standard BioTools, Inc. 

params function

<dl><dt>adat</dt>
<dd>A <code>soma_adat</code> object (with intact attributes),
typically created using <code>read_adat()</code>.</dd>
<dt>x</dt>
<dd>A <code>soma_adat</code> object (with intact attributes),
typically created using <code>read_adat()</code>.</dd>
<dt>matrix</dt>
<dd>Character. A string of (usually) either
<code>"serum"</code> or <code>"plasma"</code>.</dd></dl>

Arguments

Common Parameters in SomaDataIO — params

<dl>

<dt>adat</dt>
<dd>A <code>soma_adat</code> object (with intact attributes),
typically created using <code>read_adat()</code>.</dd>


<dt>x</dt>
<dd>A <code>soma_adat</code> object (with intact attributes),
typically created using <code>read_adat()</code>.</dd>


<dt>matrix</dt>
<dd>Character. A string of (usually) either
<code>"serum"</code> or <code>"plasma"</code>.</dd>

</dl>

params: Common Parameters in SomaDataIO

Description

Value

Arguments