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SomaticSignatures (version 2.8.4)

Somatic Signatures

Description

The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs). It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.

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Version

Version

2.8.4

License

MIT + file LICENSE

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Repository

https://github.com/juliangehring/SomaticSignatures

Maintainer

Julian Gehring

Last Published

February 15th, 2017

Functions in SomaticSignatures (2.8.4)

motif-functions

Group somatic moticfs

mutation-distribution

Distributions of mutational locations.

Human Chromosome Names

GRanges-converters

GRanges converter functions

cluster-spectrum

Cluster Mutational Spectrum

decomposition-signatures

Decomposition Functions for Somatic Signatures

mutationContext

mutationContext functions

mutational-normalization

Normalize Somatic Motifs

mutational-plots

Mutational Plots

mutational-signatures

Estimate Somatic Signatures

signatures21-data

signature-plots

Plot Mutational Signatures

SomaticSignatures

SomaticSignatures package

SomaticCancerAlterations Results

Utility functions