result_regional

This example dataset is the result of running the <code>run_SpaCCI</code> function.
It contains the inferred cell-cell interactions across the regional scale.

datasets

Provides tools for analyzing spatial cell-cell interactions based on ligand-receptor pairs, including functions for local, regional, and global analysis using spatial transcriptomics data. Integrates with databases like 'CellChat' <http://www.cellchat.org/>, 'CellPhoneDB' <https://www.cellphonedb.org/>, 'Cellinker' <https://www.rna-society.org/cellinker/index.html>, 'ICELLNET' <https://github.com/soumelis-lab/ICELLNET>, and 'ConnectomeDB' <https://humanconnectome.org/software/connectomedb/> to identify ligand-receptor pairs, visualize interactions through heatmaps, chord diagrams, and infer interactions on different spatial scales.

Li-Ting Ku

SpaCCI

Spatially Aware Cell-Cell Interaction Analysis

result_regional function

A list containing:<dl>
 <dt>pvalue_df</dt>
<dd>A data frame of p-values and adjusted p-values for cell-cell interactions.</dd>
</dl>

Format

result_regional data for SpaCCI — result_regional

A list containing:<dl>
 <dt>pvalue_df</dt>
<dd>A data frame of p-values and adjusted p-values for cell-cell interactions.</dd>


</dl>

result_regional: result_regional data for SpaCCI

Description

Usage

Arguments

Format

Details

Examples