SpaDES.tools (version 2.0.6)

rings: Identifies all cells within a ring around the focal cells

Description

Identifies the cell numbers of all cells within a ring defined by minimum and maximum distances from focal cells. Uses spread() under the hood, with specific values set. Under many situations, this may be faster than using sf::st_buffer twice (once for smaller ring and once for larger ring, then removing the smaller ring cells).

Usage

rings(
  landscape,
  loci = NA_real_,
  id = FALSE,
  minRadius = 2,
  maxRadius = 5,
  allowOverlap = FALSE,
  returnIndices = FALSE,
  returnDistances = TRUE,
  ...
)

Value

This will return a data.table with columns as described in spread when returnIndices = TRUE.

Arguments

landscape

A RasterLayer or SpatRaster object. This defines the possible locations for spreading events to start and spread into. This can also be used as part of stopRule.

loci

A vector of locations in landscape. These should be cell indices. If user has x and y coordinates, these can be converted with cellFromXY().

id

Logical. If TRUE, returns a raster of events ids. If FALSE, returns a raster of iteration numbers, i.e., the spread history of one or more events. NOTE: this is overridden if returnIndices is TRUE or 1 or 2.

minRadius

Numeric. Minimum radius to be included in the ring. Note: this is inclusive, i.e., >=.

maxRadius

Numeric. Maximum radius to be included in the ring. Note: this is inclusive, i.e., <=.

allowOverlap

Logical. If TRUE, then individual events can overlap with one another, i.e., they do not interact (this is slower than if allowOverlap = FALSE). Default is FALSE.

returnIndices

Logical or numeric. If 1 or TRUE, will return a data.table with indices and values of successful spread events. If 2, it will simply return a vector of pixel indices of all cells that were touched. This will be the fastest option. If FALSE, then it will return a raster with values. See Details.

returnDistances

Logical. Should the function include a column with the individual cell distances from the locus where that event started. Default is FALSE. See Details.

...

Any other argument passed to spread

Author

Eliot McIntire

See Also

cir() which uses a different algorithm. cir tends to be faster when there are few starting points, rings tends to be faster when there are many starting points. Another difference between the two functions is that rings takes the centre of the pixel as the centre of a circle, whereas cir takes the exact coordinates. See example.

sf::st_buffer

Examples

library(terra)

origDTThreads <- data.table::setDTthreads(2L)
origNcpus <- options(Ncpus = 2L)
set.seed(1462)

# Make random forest cover map
emptyRas <- terra::rast(terra::ext(0, 1e2, 0, 1e2), res = 1)

# start from two cells near middle
loci <- (ncell(emptyRas) / 2 - ncol(emptyRas)) / 2 + c(-3, 3)

# No overlap is default, occurs randomly
emptyRas[] <- 0
rngs <- rings(emptyRas, loci = loci, minRadius = 7, maxRadius = 9, returnIndices = TRUE)
emptyRas[rngs$indices] <- rngs$id
if (interactive()) {
  terra::plot(emptyRas)
}

# Variable ring widths, including centre cell for smaller one
emptyRas[] <- 0
rngs <- rings(emptyRas, loci = loci, minRadius = c(0, 7), maxRadius = c(8, 18),
              returnIndices = TRUE)
emptyRas[rngs$indices] <- rngs$id
if (interactive()) {
  terra::plot(emptyRas)
}

# clean up
data.table::setDTthreads(origDTThreads)
options(Ncpus = origNcpus)