Build a module dependency graph
Open a new plotting window
Cache method for simList class objects
Get colours for plotting Raster* objects.
Build edge list for module dependency graph
Simulation modules and dependencies
Add simulation dependencies
Open all modules nested within a base directory
Fast `adjacent` function, and Just In Time compiled version
The .spadesPlot class
Show an Object
Set colours for plotting Raster* objects.
Check use and existence of params passed to simulation.
Move
Remove any reference to environments in a simList
Define a parameter used in a module
Process a simulation event
Check for existence of object(s) referenced by a objects slot of a simList object
Create new module from template.
Simulation module dependency diagram
Prune edges to remove cycles in module dependencies
Simulation event diagram
Make SpatialLines object from two SpatialPoints objects
Convert plotArgs to list of lists
Determine which modules in a list are unparsed
Extracts the object names
ganttStatus
randomPolygons
Make an optimal layout of plots
Assess whether a list of extents are all equal
Get the name of a source-ed file
Progress bar
SELES - Initiate agents
Load simulation objects according to filelist
Parse arguments and find environments
Determine module load order
Define a new module.
Plot spatial grobs (using grid package)
List simulation objects and their structure
Find factors
Assign to the internal SpaDES environment.
List simulation objects
Identify where to get the grob from
Determine the largest timestep unit in a simulation
Extract the layer names of Spatial Objects
Identify pixels in a circle around a SpatialPoints* object.
Simulation event lists
Split a raster into multiple tiles.
The .arrangement class
Get objects from the internal SpaDES environment
SELES - Agent Location at initiation
Simulation checkpoints.
Vectorized wrapped normal density function
Load packages.
Prepare raster for plotting
Schedule a simulation event
Simulate a spread process on a landscape.
Make a .spadesPlot class object
Generate random strings
Classes defined in SpaDES
Parse and extract module metadata
Produce a raster of a random Gaussian process.
Heading between spatial points.
Categorized overview of the SpaDES package
Convert numeric to character with padding
The .spatialObjects class
The .spadesGrob class
Importing some grid functions
Test whether a number lies within range [a,b]
Inputs and outputs - adding file-based inputs and saving files
Simulation object dependency diagram
specificNumPerPatch
Create a zip archive of a module subdirectory
Convert reduced representation to full raster
sim2gantt
Sort a any named object with dotted names first
Make viewports
The .simDeps class
Clear plotting device
Update elements of a named list with elements of a second named list
Find the number of layers in a Spatial Object
The .spadesPlotObjects class
SELES - Transitioning to next time step
Normalize filepath.
Run a spatial discrete event simulation
The SpaDES environment
Read raster to memory
The .spadesPlottables class
Dummy maps included with SpaDES
Save simulation objects according to params
Parse and initialize a module
Get and set simulation times.
Extract or replace parts of an object from the simulation environment
SELES - Probability of Initiation
Get and set simulation parameters.
Specify paths for modules, inputs and outputs
Merge two SpaDES Plot objects
Initialize a new simulation
Copy or move objects from one environment to another
Download a module from a SpaDES module GitHub repository
The .moduleDeps class
Check filepath.
SpaDES time units
Get simulation package dependencies
Convert grid.locator units
The simList class
Mouse interactions with Plots
Wrap coordinates or pixels in a torus-like fashion
Determine optimal plotting arrangement of plot objects
Filter objects by class
Specify where to plot
Is an object defined in the .spades environment?
initialize,simList-method
Generate a simList object
Simulation environment
Find the latest module version from a SpaDES module repository
Patch size
The simList_ class
SELES - Number of Agents to initiate
Plot: Fast, optimally arranged, multipanel plotting function with SpaDES
Add a module to a moduleList
Determine the smallest timeunit in a simulation
Convert Raster to color matrix useable by raster function for plotting
Convert time units