mu_solver

- A matrix of regularized mean values.

- Relationship matrix, describing relationship between d-1 and d.

- Equality matrix specifying the number of following terms to
which mu_d is equal.

- Vector with the number of samples in each condition for this
cluster.

Small term to ensure existance of solution.

delta

Calculates the regularized center values for a cluster. This function
 runs inside <code>sparse_mdc</code>.

Implements the algorithm described in
Barron, M., and Li, J. (Not yet published). This algorithm clusters
samples from multiple ordered populations, links the clusters across the
conditions and identifies marker genes for these changes. The package was
designed for scRNA-Seq data but is also applicable to many other data
types, just replace cells with samples and genes with variables. The
package also contains functions for estimating the parameters for SparseMDC
as outlined in the paper. We recommend that users further select their
marker genes using the magnitude of the cluster centers.

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mu_solver: Mu Solver

Description

Usage

Arguments

Value